Open source

Head-size-independent neurodegeneration biomarker

• Deep-learning pipeline that segments hippocampus and ventricles from T1 MRI to compute a head-size-independent neurodegeneration biomarker.
• Outperforms hippocampal volume alone for tracking cognitive decline in Alzheimer's and Parkinson's cohorts.
• Published in Human Brain Mapping (2025).

GitHub · Docker Hub · Paper

Collaborative MRI quality control for research teams

• Collaborative web tool for MRI quality control: shared dashboard, rater assignments, scan history.
• In the paper's evaluation, registration QC was 2–3× faster than a conventional viewer, and segmentation checks up to 20× faster.
• Published in Aperture Neuro (2024).

GitHub · Docker Hub · Paper

• mriqception — MRI quality-control toolkit. Neurohackademy 2019, University of Washington. github.com/elizabethbeard/mriqception
• FANI-Pack (Find All New ICDs Package) — ICD-9→10 conversion function for the R package icd. Women-led BioData Science Hackathon, NCBI/NIH, 2019. github.com/NCBI-Hackathons/Design-of-ICD-9-to-10-…